PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013623149.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 301aa    MW: 33040.1 Da    PI: 8.063
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013623149.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix513.8e-1672158186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+++ +++Li+a  e+  + ++g lk+++W ev++ +    + +++++ +qCk++++ ++k+yk++k+   ++  +  s++++f++le
  XP_013623149.1  72 CWSEEATRVLIDAWGERFAEPGKGTLKQQQWHEVAEIVngsGQCKYTKTDVQCKNRIDTVKKKYKQEKAKIASG--DGPSKWAFFKKLE 158
                     7*************************************88888889**************************98..56668******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.6E-2471160No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MEEEDETQPS PAPSSPPVLP TSNVTVASAT KPPPSPPSPS RNALALVVHT PSVTVNKNGR  60
SGGGGGGGRD DCWSEEATRV LIDAWGERFA EPGKGTLKQQ QWHEVAEIVN GSGQCKYTKT  120
DVQCKNRIDT VKKKYKQEKA KIASGDGPSK WAFFKKLESL IGGGGKAQVV GASSSGPMRW  180
HFRKRSASET ESESEPEHSA ESLPPLQPLP KRLKMGESGV GEVAKAILGF TEAYEKAETG  240
KIKLMLELEK ERMKFFKEME LQRMQFLRTQ MEITQKNQEE ERSKPRINDD DDVKNNGDVS  300
S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623149.10.0PREDICTED: trihelix transcription factor ASIL1-like
SwissprotQ9SYG21e-119ASIL1_ARATH; Trihelix transcription factor ASIL1
TrEMBLA0A078JAZ00.0A0A078JAZ0_BRANA; BnaC03g78260D protein
STRINGBra014370.1-P1e-119(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89101637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54060.12e-746B-interacting protein 1-like 1